Understanding Cancer Energetics-Johns Hopkins researchers solve mystery of Warburg effect

in medicine, biology, omics

A new paper published in the journal Cell reports how cancer cells control oxygen utilization. Cancer cells have been known to consume a lot of sugar to stay alive. In fact, where normal, noncancerous cells generate energy from using some sugar and a lot of oxygen, cancerous cells use virtually no oxygen and a lot of sugar.

This alteration in the method by which energy is produced in the cell is partially due to a survival instinct of the cell to circumvent low oxygen availability.  When oxygen is low in the cell or tissue, the condition is called hypoxia. In the normal course, most of the energy in the cell is produced by the mitochondria,  in the form of ATP.  However, mitochondrial production of energy needs abundant supply of oxyen.  Therefore, under low oxygen conditions, the cell switch off mitochondria and start producing energy molecules in the cytoplasm, this process is called Warburg effect

Many genes have been implicated in this process and now, reporting in the May 27 issue of Cell, researchers at the Johns Hopkins University School of Medicine have discovered that Warburg effect is controlled.

"It turns out to be a feed-forward mechanism, where protein A turns on B, which in turn goes back and helps A do more," says Gregg Semenza, M.D., Ph.D., the C. Michael Armstrong Professor of Medicine, director of the vascular program at Johns Hopkins' Institute for Cell Engineering and a member of the McKusick-Nathans Institute of Genetic Medicine. "PKM2 normally functions as an enzyme involved in the metabolism of glucose, but in this case we have demonstrated a novel role in the control of gene expression in cancer cells."

Nearly 20 years ago, Semenza's research team discovered that a protein called hypoxia inducible factor-1 (HIF-1) can turn on a number of genes that that help cells survive when oxygen levels fall too low.  Because of this, HIF-1 is also referred to as the oxygen sensor of cells.  Being a transcription factor, it has the ability to bind to the promoters of many genes and facilitate transcription of those genes.  HIF-1 is known to activate the transcription of at least one hundred different genes.

In addition to genes that contribute to building new blood vessels, HIF-1 also turns on genes involved in the metabolic process that turns glucose into energy. One of those genes, pyruvate kinase M2 or PKM2, catalyzes the first step of this metabolic process and is present only in cancer cells.

To figure out whether and if HIF-1 and PKM2 interact, the team first engineered cells to have or lack HIF-1. They kept them in high or low oxygen for 24 hours and found that cells starved of oxygen, but containing HIF-1, had more PKM2 than cells without HIF-1, suggesting that HIF-1 controls the production of PKM2.

The team then asked if HIF-1 and PKM2 physically interact with each other by isolating one of the two proteins from cells; they found that pulling one out also resulted in the other coming along for the ride, showing that the two proteins do in fact bind to each other.

Knowing that the primary function of HIF-1 is to bind DNA and turn on specific genes, Semenza's team next asked whether PKM2 somehow helped
HIF-1 do that. They examined genes known to be activated by HIF-1 in low oxygen after the removal of PKM2 and found that without PKM2, less HIF-1 was bound to DNA.

Now armed with evidence that PKM2 helps HIF-1 turn on genes, the team looked at the activity of genes directly involved in the metabolic pathway that burns so much sugar in cancer cells and compared genes known to be activated by HIF-1 with those not affected by HIF-1. Removing PKM2 from cells had no effect on genes not controlled by HIF-1 but reduced the activity of HIF-1-controlled genes.

"These results were really astounding," says Semenza. "In addition to solving the long-standing mystery of the Warburg effect, we also discovered that PKM2 may play a far broader role in promoting cancer progression than has been appreciated before."

This study was funded by the National Heart, Lung and Blood Institute.

Source article: Pyruvate Kinase M2 Is a PHD3-Stimulated Coactivator for Hypoxia-Inducible Factor 1. Weibo Luo, Hongxia Hu, Ryan Chang, Jun Zhong, Matthew Knabel, Robert O'Meally, Robert Cole, Akhilesh Pandey and Gregg Semenza. Cell 145(5):732-27. Published May 27, 2011. doi:10.1016/j.cell.2011.03.054.

Link to Dr Gregg L. Semenza's laboratory
 

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